In [184]:
import boto3
import networkx as nx
import time
from py2neo import Graph, Node, Relationship
import community
Lets download the data first.
In [135]:
session = boto3.Session(
aws_access_key_id='AKIAJA5TRUVIP2L4FSOA',
aws_secret_access_key='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',
region_name='eu-central-1'
)
s3_client_epfl = session.client("s3")
In [136]:
bucket = 'somed.networks'
key = 'test.gexf'
with open('data.nx', 'wb') as data_file:
s3_client_epfl.download_fileobj(bucket, key, data_file)
Lets read data
In [137]:
G = nx.read_gexf('data.nx')
Delete everything before add something
In [205]:
graph = Graph("http://neo4j:qqwweerr@localhost:7474/db/data/")
# graph.delete_all() # Be carefull
In [21]:
nodes = {}
edges = {}
root_partition = Node("Community", name=str(0), optainedBy="Root", timestamp=str(time.time()))
graph.create(root_partition)
for node in G.nodes():
nodes[node] = Node("Instauser", name=str(node))
graph.create(nodes[node])
for source, target in G.edges():
edges[str(source) + str(target)] = Relationship(nodes[str(source)], "LIKES", nodes[str(target)])
graph.create(edges[str(source) + str(target)])
for _, node in nodes.items():
root_community_edge = Relationship(node, "MEMBER_OF", root_partition)
graph.create(root_community_edge)
Create Order Node
In [31]:
query = """
MATCH (a:Order) RETURN MAX(a.name) AS m
"""
max_result = graph.run(query).data()[0]
max_order = int(float(max_result['m'])) + 1 if max_result['m'] else 0
order_node = Node("Order", name=str(max_order), optainedBy="Louvain", timestamp=str(time.time()))
graph.create(order_node)
In [59]:
Out[59]:
1
In [60]:
query = """
MATCH (a:Community),(b:Order)
WHERE a.name = '{}' AND b.name = '{}'
CREATE (a)-[r:SUB_COMMUNITY_OF]->(b)
RETURN r
""".format("0", "0")
graph.run(query).data()
Out[60]:
[{'r': (0)-[:SUB_COMMUNITY_OF {}]->(0)}]
Create community nodes
In [33]:
partitions = community.best_partition(G)
In [46]:
query = """
MATCH (a:Community) RETURN MAX(a.name) AS m
"""
max_result = graph.run(query).data()[0]
max_community = int(float(max_result['m'])) + 1 if max_result['m'] else 0
partitions_ids_map = {x: x + max_community for x in list(set(partitions.values()))}
for instauser in list(partitions.keys()):
partitions[instauser] = partitions_ids_map[partitions[instauser]]
partitions
Out[46]:
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...}
Okey we now have communities lets add them
In [55]:
community_nodes = {}
for partition in list(set(partitions_ids_map.values())):
community_nodes[partition] = Node("Community", name=str(partition))
graph.create(community_nodes[partition])
sub_community_of = Relationship(community_nodes[partition], "SUB_COMMUNITY_OF", root_partition)
graph.create(sub_community_of)
order_of = Relationship(community_nodes[partition], "ORDER_OF", order_node)
graph.create(order_of)
for instauser_id, partition in partitions.items():
member_of = Relationship(nodes[instauser_id], "MEMBER_OF", community_nodes[partition])
graph.create(member_of)
In [50]:
partitions_ids
Out[50]:
{0: 1,
1: 2,
2: 3,
3: 4,
4: 5,
5: 6,
6: 7,
7: 8,
8: 9,
9: 10,
10: 11,
11: 12,
12: 13,
13: 14,
14: 15,
15: 16,
16: 17,
17: 18,
18: 19,
19: 20,
20: 21,
21: 22,
22: 23,
23: 24,
24: 25,
25: 26,
26: 27,
27: 28,
28: 29,
29: 30,
30: 31,
31: 32,
32: 33}
In [203]:
query = \
"""
MATCH () - [a:MEMBER_OF] - () DELETE a
"""
max_result = graph.run(query).data()
query = \
"""
MATCH () - [a:ORDER_OF] - () DELETE a
"""
max_result = graph.run(query).data()
query = \
"""
MATCH () - [a:SUB_COMMUNITY_OF] - () DELETE a
"""
max_result = graph.run(query).data()
query = \
"""
MATCH () - [a:PROCESSED_BY] - () DELETE a
"""
max_result = graph.run(query).data()
query = \
"""
MATCH () - [a:CREATE] - () DELETE a
"""
max_result = graph.run(query).data()
query = \
"""
MATCH (a:Community) DELETE a
"""
max_result = graph.run(query).data()
query = \
"""
MATCH (a:Order) DELETE a
"""
max_result = graph.run(query).data()
In [ ]:
root_node = Node("Community", name=str(0))
graph.create(root_node)
for instauser_id, partition in communities.items():
query = """
MATCH (a:Instauser),(b:Community)
WHERE a.name = '{}' AND b.name = '{}'
CREATE (a)-[r:MEMBER_OF]->(b)
RETURN r
""".format(instauser_id, '0')
graph.run(query)
In [125]:
import community
partitions = community.best_partition(G)
parent_community_id = '0'
communities = partitions
algorithm = 'louvain'
database.insert_community_analysis(communities, parent_community_id, algorithm)
MATCH (a:Community),(b:Order)
WHERE a.name = '0' AND b.name = '2'
CREATE (a)-[r:PROCESSED_BY]->(b)
RETURN r
In [88]:
query = \
"""
MATCH
(a:Instauser) - [:MEMBER_OF] - (:Community {name: '0'})
RETURN a.name AS name
"""
results = graph.run(query).data()
instausers = [i['name'] for i in results]
assert len(list(communities.keys())) == len(instausers)
In [89]:
assert set(list(communities.keys())) == set(instausers)
In [206]:
G = nx.read_gpickle('/home/epfl/data/output.nx')
In [207]:
outdeg = G.degree()
to_remove = [n for n in outdeg if outdeg[n] == 1]
to_keep = [n for n in outdeg if outdeg[n] != 1]
sub = G.subgraph(to_keep)
In [208]:
len(sub.nodes())
G = sub
In [210]:
query = """
CREATE (a:Community {name: 0})
RETURN a
"""
graph.run(query)
for node in G.nodes():
query = """
MATCH (a:Instauser),(b:Community)
WHERE a.name = %s AND b.name = 0
CREATE (a)-[r:MEMBER_OF]->(b)
RETURN r
""" % (node)
graph.run(query)
In [196]:
nodes = {}
edges = {}
query = """
CREATE (a:Community {name: 0})
RETURN a
"""
graph.run(query)
for node in G.nodes():
query = """
CREATE (a:Instauser {name: %s})
RETURN a
""" % str(node)
graph.run(query)
for source, target in G.edges():
query = """
MATCH (a:Instauser),(b:Instauser)
WHERE a.name = %s AND b.name = %s
CREATE (a)-[r:LIKED]->(b)
RETURN r
""" % (source, target)
graph.run(query)
In [178]:
nodes
Out[178]:
{36950375: (:Instauser {name: '36950375'}),
227821023: (:Instauser {name: '227821023'}),
321272: (:Instauser {name: '321272'}),
7074412: (:Instauser {name: '7074412'}),
1779894666: (:Instauser {name: '1779894666'}),
524980639: (:Instauser {name: '524980639'}),
772581894: (:Instauser {name: '772581894'}),
5443599152: (:Instauser {name: '5443599152'}),
1572241409: (:Instauser {name: '1572241409'}),
323835957: (:Instauser {name: '323835957'}),
357095537: (:Instauser {name: '357095537'}),
5996359794: (:Instauser {name: '5996359794'}),
2275500165: (:Instauser {name: '2275500165'}),
333078712: (:Instauser {name: '333078712'}),
5912606913: (:Instauser {name: '5912606913'}),
305887429: (:Instauser {name: '305887429'}),
209293513: (:Instauser {name: '209293513'}),
1317699805: (:Instauser {name: '1317699805'}),
1813956840: (:Instauser {name: '1813956840'}),
3678617854: (:Instauser {name: '3678617854'}),
1309886720: (:Instauser {name: '1309886720'}),
457552142: (:Instauser {name: '457552142'}),
2024919313: (:Instauser {name: '2024919313'}),
3996821788: (:Instauser {name: '3996821788'}),
1298422046: (:Instauser {name: '1298422046'}),
1443031356: (:Instauser {name: '1443031356'}),
570253636: (:Instauser {name: '570253636'}),
4827717977: (:Instauser {name: '4827717977'}),
5474885990: (:Instauser {name: '5474885990'}),
378827113: (:Instauser {name: '378827113'}),
6193359217: (:Instauser {name: '6193359217'}),
5992417673: (:Instauser {name: '5992417673'}),
1629378964: (:Instauser {name: '1629378964'}),
4734722452: (:Instauser {name: '4734722452'}),
25489829: (:Instauser {name: '25489829'}),
41656754: (:Instauser {name: '41656754'}),
2004939200: (:Instauser {name: '2004939200'}),
1467533764: (:Instauser {name: '1467533764'}),
248793549: (:Instauser {name: '248793549'}),
3612895734: (:Instauser {name: '3612895734'}),
194660866: (:Instauser {name: '194660866'}),
618695195: (:Instauser {name: '618695195'}),
2287409729: (:Instauser {name: '2287409729'}),
50690646: (:Instauser {name: '50690646'}),
565590641: (:Instauser {name: '565590641'}),
3640879767: (:Instauser {name: '3640879767'}),
3465169573: (:Instauser {name: '3465169573'}),
1647520425: (:Instauser {name: '1647520425'}),
2266645206: (:Instauser {name: '2266645206'}),
33878767: (:Instauser {name: '33878767'}),
1554369274: (:Instauser {name: '1554369274'}),
48382762: (:Instauser {name: '48382762'}),
217144106: (:Instauser {name: '217144106'}),
2273551151: (:Instauser {name: '2273551151'}),
401513287: (:Instauser {name: '401513287'}),
4479474514: (:Instauser {name: '4479474514'}),
2888550: (:Instauser {name: '2888550'}),
3625227121: (:Instauser {name: '3625227121'}),
4231254900: (:Instauser {name: '4231254900'}),
2651001: (:Instauser {name: '2651001'}),
1452870538: (:Instauser {name: '1452870538'}),
5433007006: (:Instauser {name: '5433007006'}),
15612836: (:Instauser {name: '15612836'}),
1407909: (:Instauser {name: '1407909'}),
2427780010: (:Instauser {name: '2427780010'}),
1519725490: (:Instauser {name: '1519725490'}),
3550166000: (:Instauser {name: '3550166000'}),
1475400696: (:Instauser {name: '1475400696'}),
4216290303: (:Instauser {name: '4216290303'}),
1165208595: (:Instauser {name: '1165208595'}),
362869799: (:Instauser {name: '362869799'}),
6246054987: (:Instauser {name: '6246054987'}),
3468512340: (:Instauser {name: '3468512340'}),
291095641: (:Instauser {name: '291095641'}),
5866728559: (:Instauser {name: '5866728559'}),
20110451: (:Instauser {name: '20110451'}),
4058471558: (:Instauser {name: '4058471558'}),
2096366738: (:Instauser {name: '2096366738'}),
3505763512: (:Instauser {name: '3505763512'}),
49429730: (:Instauser {name: '49429730'}),
5981342956: (:Instauser {name: '5981342956'}),
314146034: (:Instauser {name: '314146034'}),
5443116299: (:Instauser {name: '5443116299'}),
275367216: (:Instauser {name: '275367216'}),
3435001136: (:Instauser {name: '3435001136'}),
2150317374: (:Instauser {name: '2150317374'}),
3270229338: (:Instauser {name: '3270229338'}),
32372064: (:Instauser {name: '32372064'}),
347725192: (:Instauser {name: '347725192'}),
2000332172: (:Instauser {name: '2000332172'}),
21716380: (:Instauser {name: '21716380'}),
1722600866: (:Instauser {name: '1722600866'}),
179439030: (:Instauser {name: '179439030'}),
2221913527: (:Instauser {name: '2221913527'}),
5451343305: (:Instauser {name: '5451343305'}),
3645189582: (:Instauser {name: '3645189582'}),
3292110310: (:Instauser {name: '3292110310'}),
3130858998: (:Instauser {name: '3130858998'}),
1548994050: (:Instauser {name: '1548994050'}),
492936716: (:Instauser {name: '492936716'}),
6311874063: (:Instauser {name: '6311874063'}),
5924703794: (:Instauser {name: '5924703794'}),
3171360335: (:Instauser {name: '3171360335'}),
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1004639879: (:Instauser {name: '1004639879'}),
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218922207: (:Instauser {name: '218922207'}),
4284557044: (:Instauser {name: '4284557044'}),
56012021: (:Instauser {name: '56012021'}),
175021302: (:Instauser {name: '175021302'}),
6018985211: (:Instauser {name: '6018985211'}),
209817853: (:Instauser {name: '209817853'}),
104843011: (:Instauser {name: '104843011'}),
1836909835: (:Instauser {name: '1836909835'}),
517633295: (:Instauser {name: '517633295'}),
6208510229: (:Instauser {name: '6208510229'}),
181683480: (:Instauser {name: '181683480'}),
5877226786: (:Instauser {name: '5877226786'}),
3046941987: (:Instauser {name: '3046941987'}),
216300837: (:Instauser {name: '216300837'}),
1445492014: (:Instauser {name: '1445492014'}),
4212595010: (:Instauser {name: '4212595010'}),
52905795: (:Instauser {name: '52905795'}),
6211856197: (:Instauser {name: '6211856197'}),
1819334484: (:Instauser {name: '1819334484'}),
49518421: (:Instauser {name: '49518421'}),
4035782997: (:Instauser {name: '4035782997'}),
4937703773: (:Instauser {name: '4937703773'}),
5931000672: (:Instauser {name: '5931000672'}),
190948197: (:Instauser {name: '190948197'}),
2208884069: (:Instauser {name: '2208884069'}),
1187962217: (:Instauser {name: '1187962217'}),
4814395769: (:Instauser {name: '4814395769'}),
502765436: (:Instauser {name: '502765436'}),
3088817025: (:Instauser {name: '3088817025'}),
1229319554: (:Instauser {name: '1229319554'}),
2262834052: (:Instauser {name: '2262834052'}),
1444937610: (:Instauser {name: '1444937610'}),
16508822: (:Instauser {name: '16508822'}),
2285050274: (:Instauser {name: '2285050274'}),
2125903781: (:Instauser {name: '2125903781'}),
...}
In [ ]:
data[0]
In [171]:
for l in data[:10]:
print(l['name'])
537569
247447041
221684260
213951333
316236037
222306121
256829035
243203979
995045100
1032051758
In [199]:
import sys
sys.path.append('/home/epfl/ftp/insta-network/src')
from GraphDatabase import Database
db = Database()
graph = db.get_community(0)
In [200]:
graph.nodes()
Out[200]:
[]
In [ ]:
db.get_community(root_community)
Content source: mdeff/ntds_2017
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